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Who is Ancestor X? The biggest mystery in human evolution

The search for the direct ancestor of humans, Neanderthals and Denisovans has been protracted and puzzling. Now, fresh clues are adding a surprising twist to the tale

THE year is 1933, and China is partly under the control of invading Japanese forces. During construction of a bridge near Harbin in the north-east, a local man working for the Japanese makes a stunning discovery: an ancient human skull. He recognises the skull’s value right away. Determined not to hand the fossil over to the occupiers, he buries it in an abandoned well.

There the skull remained until 2018, when, shortly before his death, the man told his family of its existence. In due course, the Harbin skull came into scientific hands. It was worth the wait, not least for the clues it offers those searching for the enigmatic Ancestor X – the species that gave rise to humanity.

For as long as researchers have been finding ancient human-like fossils, one question has been nagging away in the back of their minds: how are we related to other prehistoric groups and species? In particular, how do we fit in with the Neanderthals and Denisovans who shared Earth with us for most of our existence? It is this question that the discovery of Ancestor X promises to answer. However, the hunt for it has been fiendish, with major twists and turns along the way. In recent years, it has also led to some surprising discoveries, including the revelation that we had misunderstood the way our species, Homo sapiens, evolved. Now, with the re-emergence of the Harbin skull, the search for Ancestor X looks set to get easier in some ways – and a lot more difficult in others.

When it comes to the big picture of human evolution, universal consensus is hard to find. However, by the final decades of the 20th century, many researchers accepted a few key points. The first was that all living people today are so genetically similar to one another that .辱Բ must have emerged no more than a few hundred thousand years ago. The second was that this happened in a corner of Africa, which would explain why most of the genetic diversity that exists in our species today is largely concentrated in Africa. A third widely held idea was that our parent species also gave rise to a second species, Homo neanderthalensis, the Neanderthals. In other words, the two species share a common ancestor, dubbed Ancestor X.

Putting all the pieces together, a relatively simple picture emerged. Several hundred thousand years ago, our parent species was present in parts of Africa and Europe. Then, a small population of this Ancestor X became isolated in Africa for long enough to evolve new genetic and physical traits and give rise to our species. At roughly the same time, another small population of Ancestor X became isolated in Europe and evolved into the Neanderthals. Eventually, the isolation ended. .辱Բ and Neanderthals both began to spread, consigning all remaining populations of Ancestor X to extinction. Ultimately, .辱Բ spread so far and wide that it encountered Neanderthals – and sent them to extinction too.

With this picture in place, the search for Ancestor X was on. By the early 1980s, at the Natural History Museum in London thought he had found it. He had spent years scrutinising the shape of Neanderthal and H. sapiens skulls to work out what they had in common: features they had probably inherited from Ancestor X. Both had large brains, similarly shaped temporal bones – pieces of the skull on each side of the head that house the ears – and other features. And, bingo, these were also seen in a third hominin, Homo heidelbergensis. What’s more, H. heidelbergensis had been present in parts of Africa and Europe between about 300,000 and 500,000 years ago. “I thought: well there you are,” says Stringer. “It’s in the right place at the right time to be the common ancestor.”

DYMDWA Reconstructed fossil skull of Homo Antecessor
The skull of Homo antecessor, a species that lived 800,000 to 850,000 years ago
Markus Schieder/Alamy Stock Photo

Common ancestor

But in the 2010s, he and many other researchers had second thoughts. Some of the best evidence about H. heidelbergensis had come from fossils found at Sima de los Huesos in Spain, and by the mid 2010s, it was clear that they actually looked more like proto-Neanderthals. An analysis of ancient DNA published in 2016 lent further weight to the idea that the Sima fossils were early Neanderthals. Furthermore, using this finding together with their age – around 430,000 years old – researchers could refine the estimate for when Ancestor X had walked the planet. This pushed it back to between 550,000 and 765,000 years ago. Today, some think even this is an underestimate. For instance, a 2019 analysis of Neanderthal and H. sapiens teeth suggested that Ancestor X was on Earth 800,000 years ago or more. The message was clear: H. heidelbergensis was too young to be Ancestor X.

No matter, though, because a new Ancestor X candidate was already waiting in the wings. Curiously, this suspect – Homo antecessor – had been discovered at a site just a few hundred metres to the north of Sima de los Huesos. However, it lived about 800,000 to 850,000 years ago, making it a far more likely Ancestor X, at least on the grounds of age.

If H. antecessor is Ancestor X, it literally puts a different face on the story of recent human evolution. “H. antecessor exhibits the oldest known modern face so far found,” says at the Spanish National Research Centre for Human Evolution in Burgos. Its delicate cheekbones and flattened features are similar to those seen in living humans and are unlike the heavily built faces of Neanderthals. Because of this, there is now a surprising hypothesis about Ancestor X: perhaps it looked a little like us. “Our so-called modern face is an ancient face,” says Stringer. The Neanderthal face might actually be far more evolved.

2F4JNCJ Homo heidelbergensis aka H. sapiens heidelbergensis.Extinct species or subspecies of archaic human which existed during the Middle Pleistocene.
The skull of Homo heidelbergensis, a contender for Ancestor X
PvE/Alamy

That being said, Stringer doesn’t think H. antecessor is Ancestor X itself. In a 2016 analysis in which he considered all we can now infer about our parent species, he concluded that Ancestor X , while the part of the skull encasing the brain looked like that of a primitive H. heidelbergensis cranium , Italy. Such fossils are presumably out there somewhere, but they have yet to be discovered. The hunt goes on.

Meanwhile, there are still a few researchers betting on H. heidelbergensis, including Axel Timmermann at Pusan National University in South Korea and his colleagues, who . They ran a climate model on a supercomputer for six months to reconstruct how temperature and rainfall might have shaped what resources were available to hominins over the past 2 million years. They then combined their results with thousands of fossils and other archaeological evidence to work out where and when six species of humans – including the early .辱Բ – could have lived. Among other things, their results suggested that our species evolved from .𾱻Բ in southern Africa as conditions became hotter and more arid.

DG492K Oldest known skull of an Homo Sapiens Fossil BOU-VP 16/1 Herto cranium, Addis Ababa National Museum, Ethiopia
Oldest known skull of a Homo Sapien
agefotostock/Alamy

It is a minority view, though. Most researchers now see hints in the fossils that .𾱻Բ was more closely related to the proto-Neanderthals than to our species. That would make it a dead-end side branch of our family tree that has no relevance for understanding the origin of .辱Բ. However, a new twist in the story suggests they could be wrong.

The problem is that we appear to have fundamentally misunderstood the way human evolution works. “The idea humans originated from a small region [of Africa] doesn’t make much sense,” says at the University of Toulouse, France. “It was clear that it was problematic at least 20 years ago.” At that time, he and David Goldstein, now at Columbia University Irving Medical Center in New York, wrote a review paper explaining why.

The science is complicated – so complicated that it seems many non-geneticists missed the nuance – but Chikhi says the genetic signals in living humans imply that .辱Բ emerged as a “metapopulation” spread over a wide geographical area where several “subpopulations” . Each of these subpopulations was characterised by a subtly distinct genetic signature – and potentially a subtly distinct look.

Significantly, the idea fits well with mounting evidence on the ground. Across Africa, there are fossils between about 200,000 and 300,000 years old that look superficially like H. sapiens, but that each carry a unique mix of physical features. They appear to be representatives of some of the subpopulations that Chikhi says mixed and interbred to establish our species as a metapopulation. This idea, published in 2018, has come to be known as African multiregionalism, but Chikhi and Stringer – another advocate of the idea – prefer the term pan-African evolution.

This phenomenon may have implications for H. heidelbergensis. A fossil skull from Zambia, labelled as H. heidelbergensis, has recently been dated and . This means .𾱻Բ was still in Africa at the time .辱Բ was emerging across the continent. And although .辱Բ probably traces most of its ancestry to Ancestor X, Stringer says it is possible that one or more .𾱻Բ groups were among the subpopulations that contributed some DNA to our species. To put it another way, even if .𾱻Բ isn’t Ancestor X, it might still be among our ancestors.

Harbin skull
The Harbin skull may be from a sister species to humans and Neanderthals
Xijun Ni/Chinese Academy of Sciences

Dragon Man

Arguably, an even bigger implication of the pan-African evolution model is that it probably applies to the origin of other hominins – including Ancestor X. If so, our immediate ancestor also evolved through the mixing of numerous subpopulations of its own parent species spread over a wide geographical area. But where in the world did that happen?

To address this question, international collaborative work is required, particularly between Western and Asian scientists because, in recent decades, it has become increasingly clear that Asia is another hotbed of human evolution. Unfortunately, that hasn’t always been forthcoming. “For a long time, a few researchers had this attitude: we don’t really trust Asian science, we don’t even trust the dates on their fossils,” says at the University of Winnipeg, Canada. Whatever the causes (see “East-West relations”), she thinks the situation is finally beginning to change. “Thankfully, there is now more respect, and more of a push for international collaborations that lead to new ideas,” she says.

Which brings us back to the Harbin skull. It was clear from the moment it came to light that it was a significant find, particularly since, like H. antecessor, it had a face strikingly similar to our own. Last year, Xijun Ni at the Chinese Academy of Sciences and his colleagues, including Stringer, of the fossil, which is at least 146,000 years old. In particular, they wanted to work out where it sits in our evolutionary tree. Surprisingly, the study suggested the Harbin skull – and a few other fossils, many of them unearthed in China – belong to a previously unrecognised ancient human population that is evolutionarily even closer to H. sapiens than the Neanderthals. In an accompanying paper, Ni and some of his colleagues. Stringer isn’t a fan of the name because it supersedes one already given to similar fossils, but he doesn’t mind referring to the new human by its informal nickname: Dragon Man.

This could prove significant for those still seeking Ancestor X. Although analysis of the Harbin skull is ongoing, Stringer speculates that Dragon Man might have emerged from Ancestor X at around the same time H. sapiens and Neanderthals did, implying that , not one of twins. Perhaps, he adds, this third human group will turn out to contain the mysterious Denisovans, discovered in 2010 and considered a sort of Asian sister group to Neanderthals. Discovering the ways in which these sibling species are similar to or different from our own may offer key insights into our evolution. Even if we accept our species evolved in Africa, “east Asia is an important region for studying the origin of .辱Բ”, says Ni.

These developments are a mixed blessing. On the one hand, fossils like Harbin could help further refine our ideas about Ancestor X’s physical appearance, which might make our elusive parent species easier to recognise when we eventually find it. But on the flip side, Harbin-like fossils imply that the search might be harder than we thought, because Ancestor X could have lived almost anywhere within a truly vast geographical region. “It could have been in Africa,” says Stringer. “But it could have been in Europe – that’s where H. antecessor is – or it could have been in west Asia. It could even have been in east Asia. We just don’t know yet.”

East-West relations

Our species was long thought to have evolved from a small, heterogeneous population living in a tiny corner of Africa. Evidence countering this idea emerged two decades ago, but is only now being widely recognised. at Texas A&M University suspects that cultural influences may help explain this. “A single ‘pure’ form evolving and spreading to replace all others? That’s colonialism in Europe and that’s manifest destiny in the United States,” she says.

To be clear, she doesn’t mean that all researchers of European ancestry are racist, but that racist cultural ideas may influence their work, if unconsciously. What’s more, a few of these same researchers have been quick to criticise their colleagues in Asia and elsewhere of being under the influence of perceived cultural biases, she says. This has discouraged collaboration and made it difficult to work out how the extraordinary fossil finds made in Asia fit into the bigger picture of human evolution.

“The view is that Asian scientists are biased and ethnocentric, that they like the idea of long-standing regional continuity because the alternative is a replacement model that suggests they haven’t been in the area for as long,” says Athreya. She thinks this view is incorrect, offensive and – above all – counterproductive because it has encouraged some Western researchers to dismiss almost all scientific findings made by human evolution scientists in Asia. Fortunately, attitudes are changing.

Colin Barras is a features editor at èƵ

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Topics: Ancient humans