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The humanity switch: How one gene made us brainier

A single gene may have helped the evolution of our complex brains 2. 5 million years ago, as we were splitting from australopithecines
One gene made brains more complex
One gene made brains more complex
(Image: Natural History Museum/Science Photo Library)

Editorial:We are the improbable ape

THE stage was set. Around 2.5 million years ago, the erroneous duplication of a single gene changed the course of our brains’ evolution forever. Suddenly, our ancestors’ neurons developed complex shapes that made them capable of exchanging information with a larger number of neighbouring cells. At the same time, infant skulls became more flexible, allowing them to accommodate larger brains.

Three new studies reveal this remarkable sequence of events. Crucially, they also show that the changes happened precisely at the same time as our own Homo genus split from the australopithecines (see evolutionary tree).

Gene duplications are rare in human history. Only about 30 genes have copied themselves since we split from chimps between 4 and 6 million years ago. The few that have been studied encode genes that are very exciting, says human geneticist of the University of Washington in Seattle. Many are involved in brain development.

Eichler and of the Scripps Institute in La Jolla, California, focused on SRGAP2. This gene helps drive development of the neocortex, which in humans controls higher-order brain functions such as language and conscious thought. Humans with mutations in SRGAP2 are prone to epileptic seizures, as are mice that have been engineered to lack it.

Eichler noted that the official sequence of the human genome featured unaccounted-for genetic material next to SRGAP2. His team found that this was because the gene had duplicated itself twice and the copies were so similar to the original that no one had distinguished between them.

Further analysis revealed that the first duplication happened 3.4 million years ago, producing SRGAP2b. Around 1 million years later, this “daughter” of the original gene underwent its own duplication, producing a “granddaughter” copy: SRGAP2c. All three coexist in modern humans ().

But just like a photograph of a photograph, each new copy decreased in quality. The daughter and granddaughter genes were shorter than the original. And when Polleux replaced the original SRGAP2a gene in mice with either SRGAP2b or 2c, their brains didn’t mature normally.

When he inserted human versions of all three genes into mice, the proteins produced by the 2b and 2c genes bound to the original 2a proteins and hindered their ability to do their job. The net effect of this genetic sabotage was to give the mouse brains more time to develop.

Although the modified brains didn’t grow larger, the neurons in its neocortex changed to look like human brain cells. The spines that neurons use to exchange information with other cells grew thicker, longer and in greater numbers than in normal mouse neurons. This, say the researchers, would be likely to increase the brain’s processing power. Finally, the neurons migrated to their final positions more quickly than in unmodified mice, suggesting they could have travelled greater distances before maturity in a larger brain ().

“It all makes sense in an elegant way,” says James Noonan of Yale University. To really pin down the effects of the gene, he says, the researchers have to show that a mouse with a full triplet of SRGAP2 genes has a more connected neocortex and that its behaviour changes.

Polleux’s lab are now testing whether this is the case. His team also plans to put the human genes into a marmoset – a much closer human relative. Eichler’s group is searching for people with mutations in the granddaughter copy of SRGAP2. They want to know if this causes cognitive disorders.

The timing of the duplications is significant. The first happened 3.4 million years ago, which corresponds with when Australopithecus afarensis first began using tools, says Dean Falk of Florida State University in Tallahassee. Better still, the second duplication was 2.5 million years ago – when our genus, Homo, began separating from the now-extinct Australopithecus.

“The accidental gene duplication coincided with the time when our genus, Homo, was born”

“I’m really excited about this,” Falk says, in part because it suggests human intelligence has as much to do with brain connectivity as size. It is likely that the changes 2.5 million years ago were instrumental in allowing our brains to go through their unique growth spurt. Or as Falk puts it: “As other mutations pile on, the machinery allows for further increases in brain size.”

Falk herself has recently found evidence that while SRGAP2 was changing our brains, our ancestors’ skulls were shifting too. A 2.5-million-year-old A. africanus toddler had the same gaps in its skull as a modern baby, allowing the head to compress and fit through the birth canal. That suggests hominin brains – especially the frontal cortex – were already expanding by this time (see “The scars of size“).

What’s interesting about the SRGAP2 duplication, Eichler says, is that it would have changed brain development immediately and dramatically. Human ancestors with two, three or even more copies of the gene – and consequently stark differences in their cognitive abilities – could have coexisted at one point. “That’s fun to think about,” he says.

The researchers suspect other gene duplications will hold even more secrets about how our brains evolved. “We still have a few hundred gaps in the human genome and that’s precisely where those duplicated genes are mapping,” says Eichler. It may be that genes we share with our closest primate relatives are far more important than those that are different, and may explain why our cognitive abilities are so much greater.

Genetic turning point

The scars of size

The 2.5-million-year-old Taung Child skull is small enough to fit in the palm of a hand. All that’s left of it are a face, jaw and an internal cast of the braincase that formed when sediment replaced its rotting brain. The cast gives us an idea of what the brain of a young Australopithecus africanus looked like.

Dean Falk at Florida State University in Tallahassee and colleagues at the University of Zurich, Switzerland, noticed a faint ridge running from the top of the brain cast down towards the face. They say it shows that the two bones of the forehead had not fused together when the child died, between its 3rd and 4th birthday. As a result, sediment was able to push into the gap between the bones ().

That’s unusual. In most primates, and other hominins around at the same time as A. africanus, those bones fuse before or shortly after birth. Only in our genus, Homo, do the bones take longer to fuse, to allow the brain extra room to grow during the first years of life.

Adult A. africanus had a small brain, but the new finding suggests it might already have adopted some of the characteristics of the bigger-brained Homo genus. “We could be seeing fossil evidence for the kind of genetic reorganisation identified in the studies [by Eichler and Polleux],” says Falk (see main story).

“One thing that is becoming clear from both genome evolution and palaeontology is that this time period of 2 to 3 million years ago was one of remarkable genetic and fossil changes,” says Eichler. Colin Barras

Topics: Biology / Evolution / Genetics